PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G319700.1.p
Common NameLOC101779247, SETIT_017580mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 365aa    MW: 40044.2 Da    PI: 5.1848
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G319700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.8e-15178237155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s ++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+e+Aa+ ++ a++k++g
  Seita.1G319700.1.p 178 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARSYDVAALKYWG 237
                         5799*****************877786666336*************************98 PP

2AP249.31.2e-15280331155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Seita.1G319700.1.p 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
                         57****************9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-17178247IPR016177DNA-binding domain
CDDcd000185.67E-20178247No hitNo description
PfamPF008471.2E-11179237IPR001471AP2/ERF domain
SMARTSM003801.3E-28179251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-17179246IPR001471AP2/ERF domain
PROSITE profilePS5103219.282179245IPR001471AP2/ERF domain
PRINTSPR003671.4E-5180191IPR001471AP2/ERF domain
PfamPF008471.7E-9280331IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17280341IPR016177DNA-binding domain
CDDcd000183.43E-22280339No hitNo description
SMARTSM003802.2E-27281345IPR001471AP2/ERF domain
PROSITE profilePS5103218.571281339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19281340IPR001471AP2/ERF domain
PRINTSPR003671.4E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEESVAGVNL AKQMEKEKAA GEPGDEGAIE RSHSINLNTV PPPVAVEARS TQENGETHGA  60
EVSGTKDSRT GKPEQSSGAD QKKLPKCEQV DYESETEGCE NPAEKAALVT VVGNEGLADF  120
GDEDERAQVL TIVKKDEPAD EIGDSINPLA GAGFREEKGV VGASAEISAV RPAGSRSSSF  180
HGVTRHRWSG KYEAHLWDSS CRVEGRRRKG KQVYLGSYDT EEKAARSYDV AALKYWGQNT  240
RLNFPISQYE KELEDIRDLS REECVTYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL  300
VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYVDKGMHC IEGEGLRLLA  360
SKPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953856.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE16e-84AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP89e-84PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLK3YTI50.0K3YTI5_SETIT; Uncharacterized protein
STRINGSi017580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.18e-74AP2 family protein